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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
5.8 years ago • updated 5.0 years ago Luo Weijun ★ 1.6k
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Job: Data Manager - BC Cancer Research Center, Vancouver BC
computational genomic big data bioinformatics Job
5.5 years ago jmaanaki • 0
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Job: Postdoctoral positions in drug discovery and genome data science
computational biology biostatistics big data data science drug discovery Job
5.8 years ago Thomas Girke ★ 1.7k
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How to handle big data sets (>10GB) in Bioconductor packages?
big data methylmix memory problem
updated 6.2 years ago by 25k • written 6.2 years ago by • 0
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Subsetting Rle with ORF-sequence-positions by the 3 frames
Rle Big data coverageByTranscript
6.6 years ago hauken_heyken ▴ 80
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What is the recommended method for running WGCNA on large metatranscriptomic dataset?
wgcna transcriptome big data metagenomics gene expression
6.8 years ago jol.espinoz ▴ 40
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AnnotationHub: confusing pValue/qValue for (some) Roadmap records
roadmap project annotationhub epigenomics big data
updated 8.6 years ago by ★ 6.8k • written 8.6 years ago by ▴ 350
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Job: Postdoctoral Research Associate Position- Harvard Medical School (Probabilistic Algorithms and Software for Biomedical Big Data)
Probabilistic Algorithms Big Data Job
9.6 years ago Doe, Aimee ▴ 40
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Comment: What type of counts data to import for performing Isoform analysis in edgeR by ATpoint ★ 4.5k
Probably nf-core did not run with bootstrap/gibbs replicates. Check the code. See salmon docs on how to turn that on.
Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10
@atpoint Thank you. I did wanted to try using the `quant.sf` files from the `salmon` run by referring edgeR user guide example `4.6 Differe…
Comment: athPkgBuilder data source :missing probesets by bobihanigujjar • 0
In this article, we'll explore the demand for unbranded BJJ Gis and the benefits of choosing unbranded Gis for customization. [does anyone …
Comment: Crossover design with limma by SamGG ▴ 360
IMHO, here are the missing annotations treatmentdrug_orderDrugPlac - treatmentplacebo_orderDrugPlac, # effect of drug for the Drug…
Answer: What type of counts data to import for performing Isoform analysis in edgeR by ATpoint ★ 4.5k
You don't need any of these files. You need the `catchSalmon` function which reads `quant.sf` and the inferential (Bootstrap/Gibbs) replica…
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Comment: ANOVA like approach of edgeR
Comment: Crossover design with limma
Answer: DESeq2 normalization vs VST vs rlog
Comment: makeContrastsDream for Interaction
Answer: Limma- Print-tip loess normalisation-printer layout information does not match M
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